STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00352Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family. (236 aa)    
Predicted Functional Partners:
UWK_00353
Putative ABC transport system permease protein; PFAM: MacB-like periplasmic core domain; FtsX-like permease family.
 
     0.954
UWK_00354
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
     0.876
UWK_00355
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
       0.773
UWK_00351
Putative membrane protein; PFAM: SNARE associated Golgi protein.
       0.746
mntP
Putative membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
       0.613
UWK_00356
PAS domain S-box; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS domain; TIGRFAM: PAS domain S-box.
       0.608
UWK_01006
Dehydrogenase of unknown specificity; PFAM: short chain dehydrogenase.
 
    0.518
UWK_00357
Phosphohistidine phosphatase SixA; PFAM: Histidine phosphatase superfamily (branch 1).
       0.473
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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