STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00797PFAM: Pilus assembly protein, PilO. (212 aa)    
Predicted Functional Partners:
UWK_00796
PFAM: Fimbrial assembly protein (PilN).
 
 
 0.997
UWK_00795
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 0.986
UWK_00798
PFAM: Pilus assembly protein, PilP.
 
 
 0.983
UWK_00799
Type II secretory pathway, component HofQ; PFAM: AMIN domain; Secretin and TonB N terminus short domain; TPR repeat.
 
 
 0.979
UWK_02578
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
 
 
 
 0.818
UWK_00800
Type II secretory pathway, component PulD; PFAM: Bacterial type II and III secretion system protein; TIGRFAM: pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family.
 
   
 0.726
UWK_01239
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein.
  
 
 0.694
UWK_01020
Transglutaminase-like enzyme, putative cysteine protease; PFAM: Transglutaminase-like superfamily; Domain of unknown function (DUF3488).
  
     0.663
UWK_02361
Type IV-A pilus assembly ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; Cyclic nucleotide-binding domain; TIGRFAM: type IV-A pilus assembly ATPase PilB.
  
 
 0.587
UWK_01021
PFAM: Protein of unknown function DUF58.
 
     0.556
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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