STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_00863Doubled CXXCH motif-containing protein; PFAM: Cytochrome c554 and c-prime. (321 aa)    
Predicted Functional Partners:
UWK_00858
Hypothetical protein.
 
     0.930
UWK_00862
Collagenase-like protease; PFAM: Peptidase family U32.
 
     0.923
UWK_00861
Nucleoside-diphosphate-sugar epimerase; PFAM: Male sterility protein; SCP-2 sterol transfer family.
 
     0.851
UWK_00859
Putative RND superfamily exporter; PFAM: Patched family.
 
     0.804
UWK_00857
Putative hydrolase of the alpha/beta superfamily; PFAM: Alpha/beta hydrolase family.
 
     0.800
UWK_00860
PFAM: Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.796
UWK_02792
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
  
    0.538
UWK_00864
Hypothetical protein; PFAM: MOSC domain.
       0.516
UWK_00555
Hypothetical protein.
  
  
 0.491
UWK_03287
Nitrate reductase cytochrome c-type subunit.
  
  
 0.491
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.