STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_01364PFAM: Bacterial protein of unknown function (Gcw_chp). (244 aa)    
Predicted Functional Partners:
UWK_00821
PFAM: DnaJ domain; DnaJ-class molecular chaperone with C-terminal Zn finger domain.
  
     0.554
UWK_02318
PFAM: Class III cytochrome C family.
  
     0.473
UWK_02684
Peroxiredoxin; PFAM: TPR repeat; AhpC/TSA family; Curli production assembly/transport component CsgG.
  
     0.423
UWK_02724
Hypothetical protein; PFAM: SIR2-like domain.
  
     0.421
UWK_01365
PFAM: Pyridoxal-dependent decarboxylase conserved domain; TIGRFAM: glutamate decarboxylase; Belongs to the group II decarboxylase family.
       0.400
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.