STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_01574acetyl/propionyl-CoA carboxylase, alpha subunit; PFAM: Biotin-requiring enzyme. (148 aa)    
Predicted Functional Partners:
UWK_01576
acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta); PFAM: Carboxyl transferase domain.
 
 0.996
UWK_01573
PFAM: Na+-transporting oxaloacetate decarboxylase beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit.
 
  
 0.986
UWK_00188
PFAM: Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit.
  
 
 0.944
UWK_02898
Pyruvate carboxylase; PFAM: HMGL-like; Biotin-requiring enzyme; Conserved carboxylase domain.
 
 
 0.887
UWK_00437
Hypothetical protein.
  
 
 0.839
UWK_01636
PFAM: Biotin/lipoate A/B protein ligase family; TIGRFAM: birA, biotin-[acetyl-CoA-carboxylase] ligase region.
 
  
 0.808
UWK_01575
Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit; PFAM: Oxaloacetate decarboxylase, gamma chain.
       0.789
UWK_02310
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
  0.789
UWK_01577
methylmalonyl-CoA epimerase; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; TIGRFAM: methylmalonyl-CoA epimerase.
 
  
 0.747
UWK_00436
biotin-(acetyl-CoA carboxylase) ligase; PFAM: Biotin/lipoate A/B protein ligase family.
 
  
 0.725
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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