STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_01962Hypothetical protein; PFAM: GDSL-like Lipase/Acylhydrolase family. (423 aa)    
Predicted Functional Partners:
UWK_02468
Putative carbamoyl transferase, NodU family; PFAM: Carbamoyltransferase.
 
     0.727
UWK_01963
Protoporphyrinogen oxidase; PFAM: NAD(P)-binding Rossmann-like domain.
       0.658
UWK_01964
PFAM: Glycosyl transferase family 2.
 
     0.636
UWK_01965
Acetyltransferase, fucose-4-O-acetylase; PFAM: Acyltransferase family.
 
     0.516
UWK_02459
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.497
UWK_01807
Hypothetical protein.
 
 
 0.414
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.