STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02006PFAM: Glycosyl transferase family 2. (247 aa)    
Predicted Functional Partners:
UWK_02005
Fe-S oxidoreductase; PFAM: Radical SAM superfamily; B12 binding domain.
       0.773
UWK_02000
PFAM: Glycosyl transferase family 2.
    0.709
UWK_02004
PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
  
 0.676
UWK_02409
PFAM: Glycosyl transferase family 2.
  
     0.638
UWK_02003
PFAM: Glycosyl transferase family 2.
 
    
0.623
UWK_02002
PFAM: Glycosyltransferase Family 4; Glycosyl transferases group 1.
 
    0.588
UWK_03394
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; CoA-binding domain; TIGRFAM: Undecaprenyl-phosphate glucose phosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.478
UWK_01990
PFAM: YdjC-like protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK.
 
    0.451
UWK_03388
PFAM: Glycosyl transferase family 2.
  
     0.439
UWK_01799
Glycosyltransferase; PFAM: Glycosyl transferases group 1; overlaps another CDS with the same product name.
  
    0.402
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.