STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02015PFAM: Tetratricopeptide repeat; TPR repeat. (215 aa)    
Predicted Functional Partners:
UWK_02016
Hypothetical protein.
 
 
   0.883
UWK_02017
Hypothetical protein; PFAM: Tetratricopeptide repeat.
       0.790
UWK_00103
Cytochrome c biogenesis factor; PFAM: TPR repeat.
 
   0.779
UWK_00568
PFAM: Tetratricopeptide repeat.
 
 
 0.771
UWK_02018
PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit.
       0.721
htpG
Molecular chaperone of HSP90 family; Molecular chaperone. Has ATPase activity.
   
 0.690
UWK_00724
PFAM: Tetratricopeptide repeat.
 
 
 0.688
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.657
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.656
UWK_03131
Putative methyltransferase (contains TPR repeat); PFAM: Methyltransferase domain; TPR repeat; Tetratricopeptide repeat.
 
     0.607
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.