STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02361Type IV-A pilus assembly ATPase PilB; PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; Cyclic nucleotide-binding domain; TIGRFAM: type IV-A pilus assembly ATPase PilB. (741 aa)    
Predicted Functional Partners:
UWK_02578
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F.
 
 0.981
UWK_00236
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.874
UWK_00796
PFAM: Fimbrial assembly protein (PilN).
  
 
 0.765
UWK_00795
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
 
 
 0.737
UWK_02276
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
 
 0.723
UWK_00531
PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain.
  
 
 0.722
UWK_00799
Type II secretory pathway, component HofQ; PFAM: AMIN domain; Secretin and TonB N terminus short domain; TPR repeat.
  
 
 0.684
UWK_02278
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; overlaps another CDS with the same product name.
  
 
 0.676
UWK_02279
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; overlaps another CDS with the same product name.
  
 
 0.676
UWK_02825
PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb).
  
  
 0.643
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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