STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02472PFAM: uncharacterized protein family (UPF0104); TIGRFAM: conserved hypothetical protein. (376 aa)    
Predicted Functional Partners:
UWK_02473
Acetyltransferase (isoleucine patch superfamily); PFAM: Bacterial transferase hexapeptide (six repeats).
 
     0.838
UWK_02474
Acetyltransferase (isoleucine patch superfamily).
 
     0.804
UWK_02462
PFAM: Haloacid dehalogenase-like hydrolase.
 
     0.777
UWK_01183
Hypothetical protein.
  
     0.729
UWK_01911
PFAM: Dynamin family.
  
     0.693
UWK_01737
Hypothetical protein.
  
     0.680
UWK_01959
Putative integral membrane protein; PFAM: uncharacterized protein family (UPF0104).
  
     0.666
UWK_00447
PFAM: RimK-like ATP-grasp domain.
 
     0.596
UWK_02873
PFAM: Outer membrane efflux protein.
  
     0.589
UWK_01606
dTDP-4-dehydrorhamnose reductase; PFAM: NAD dependent epimerase/dehydratase family.
 
     0.579
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.