STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_02946DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal. (245 aa)    
Predicted Functional Partners:
UWK_02947
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.856
UWK_00048
PFAM: Toprim domain; DnaB-like helicase C terminal domain.
  
 
 0.576
UWK_02800
Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
 
 0.576
UWK_02945
Hypothetical protein.
       0.512
UWK_00654
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.510
UWK_01100
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.510
UWK_01234
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.510
UWK_02151
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.510
UWK_03323
Transposase; PFAM: Sigma-70, region 4; Integrase core domain.
    0.510
UWK_02948
Hypothetical protein.
       0.505
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.