STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_03221Ca2+-binding protein, RTX toxin; PFAM: Hemolysin-type calcium-binding repeat (2 copies). (1287 aa)    
Predicted Functional Partners:
UWK_00403
PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; TIGRFAM: type I secretion system ABC transporter, HlyB family.
 
  
 0.815
UWK_00402
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.784
UWK_03518
ABC-type bacteriocin/lantibiotic exporter; PFAM: ABC transporter; ABC transporter transmembrane region; ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain.
 
  
 0.779
UWK_03222
Hypothetical protein.
       0.774
UWK_03520
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.764
UWK_03519
ABC-type bacteriocin/lantibiotic exporter; PFAM: ABC transporter; ABC transporter transmembrane region; ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain.
 
  
 0.737
UWK_01726
Type I secretion system ATPase, LssB family; PFAM: ABC transporter; ABC transporter transmembrane region; Peptidase C39 family; TIGRFAM: type I secretion system ATPase, LssB family.
 
  
 0.718
UWK_01727
PFAM: HlyD family secretion protein; Biotin-lipoyl like; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
 
  
 0.712
UWK_03223
Hypothetical protein.
       0.615
UWK_03523
VCBS repeat-containing protein; TIGRFAM: VCBS repeat.
 
 
 0.529
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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