STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_03284PFAM: Polysulphide reductase, NrfD. (421 aa)    
Predicted Functional Partners:
UWK_01206
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S dicluster domain; 4Fe-4S binding domain.
 
 
 0.966
UWK_02642
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.961
UWK_02291
PFAM: Polysulphide reductase, NrfD.
  
   
 0.954
UWK_03285
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S dicluster domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
   0.951
UWK_03039
Polysulfide reductase.
      
 0.933
UWK_03020
PFAM: Polysulphide reductase, NrfD.
      
 0.930
UWK_00046
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
      
 0.923
UWK_00165
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
     
 0.923
UWK_00611
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
      
 0.923
UWK_00945
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain.
      
 0.923
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.