STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_03323Transposase; PFAM: Sigma-70, region 4; Integrase core domain. (517 aa)    
Predicted Functional Partners:
UWK_03322
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.856
UWK_03324
Hypothetical protein.
       0.528
UWK_00653
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.510
UWK_01101
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.510
UWK_01235
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.510
UWK_02152
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.510
UWK_02946
DNA replication protein; PFAM: IstB-like ATP binding protein; IstB-like ATP binding N-terminal.
    0.510
UWK_03325
PFAM: Permease family; TIGRFAM: uracil-xanthine permease.
       0.432
rsmI
Putative S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.427
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.