STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UWK_03387PFAM: Right handed beta helix region; TIGRFAM: parallel beta-helix repeat (two copies). (460 aa)    
Predicted Functional Partners:
UWK_03385
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase.
   
   0.709
UWK_03386
Acyltransferase family protein; PFAM: Bacterial transferase hexapeptide (six repeats).
       0.661
UWK_00491
Thioredoxin domain-containing protein; PFAM: Protein of unknown function, DUF255.
    
   0.647
UWK_00650
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: FtsK/SpoIIIE family.
    
 
 0.532
UWK_02022
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Domain of unknown function (DUF4117).
    
 
 0.532
UWK_00360
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
    
 
 0.504
UWK_00731
Outer membrane receptor for ferrienterochelin and colicins; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
    
 
 0.504
UWK_03279
Hypothetical protein.
    
 
 0.478
UWK_03383
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
       0.405
UWK_03384
Hypothetical protein; PFAM: O-antigen ligase like membrane protein.
       0.405
Your Current Organism:
Desulfocapsa sulfexigens
NCBI taxonomy Id: 1167006
Other names: D. sulfexigens DSM 10523, Desulfocapsa sulfexigens DSM 10523, Desulfocapsa sulfexigens SB164P1, Desulfocapsa sulfexigens str. DSM 10523, Desulfocapsa sulfexigens strain DSM 10523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.