STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ69415.1dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (186 aa)    
Predicted Functional Partners:
SHJ69450.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.999
SHJ31205.1
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.995
SHJ69379.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 0.995
SHJ69483.1
Phosphoglucomutase.
  
 
 0.844
SHJ78980.1
UDPglucose 6-dehydrogenase.
  
  
 0.773
SHJ39347.1
Nucleotidyl transferase.
  
 
 0.747
SHJ28687.1
Allosteric NADP-dependent malic enzyme.
  
 
  0.691
SHJ61812.1
dTDP-glucose pyrophosphorylase.
  
 
 0.660
SHK02454.1
Formate dehydrogenase beta subunit.
     
 0.650
SHI73389.1
Hypothetical protein.
 
  
 0.625
Your Current Organism:
Tangfeifania diversioriginum
NCBI taxonomy Id: 1168035
Other names: Bacteroidetes bacterium G22, CICC 10587, DSM 27063, T. diversioriginum, Tangfeifania diversioriginum Liu et al. 2014, strain G22
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