STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W97_00668Protein transporter SEC13; Belongs to the WD repeat SEC13 family. (288 aa)    
Predicted Functional Partners:
W97_00243
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.999
W97_06246
Peptidase S59 domain-containing protein.
    
 0.999
W97_07193
WD_REPEATS_REGION domain-containing protein.
    
 0.999
W97_07477
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
0.999
W97_08083
Uncharacterized protein.
    
 0.999
W97_02614
Zinc_ribbon_16 domain-containing protein.
    
 0.997
W97_05543
WD_REPEATS_REGION domain-containing protein.
    
 0.997
W97_06556
WD_REPEATS_REGION domain-containing protein.
    
 0.997
W97_03092
Protein transporter sec24.
   
 0.995
W97_02130
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.994
Your Current Organism:
Coniosporium apollinis
NCBI taxonomy Id: 1168221
Other names: C. apollinis CBS 100218, Coniosporium apollinis CBS 100218, Coniosporium apollinis CBS 352.97
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