STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W97_07842Cullin_Nedd8 domain-containing protein. (106 aa)    
Predicted Functional Partners:
W97_00290
CPSF_A domain-containing protein.
   
 0.983
W97_05780
E3 ubiquitin-protein ligase RBX1.
    
 0.961
W97_08846
WD_REPEATS_REGION domain-containing protein.
    
 0.948
W97_08731
TIP120 domain-containing protein.
   
 0.941
W97_05947
WD_REPEATS_REGION domain-containing protein.
    
 0.934
W97_04808
DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.
    
 0.925
W97_03364
COP9 signalosome complex subunit 5.
    
 0.915
W97_01083
PCI domain-containing protein.
    
 0.899
W97_05662
WD_REPEATS_REGION domain-containing protein.
    
 0.896
W97_03748
MPN domain-containing protein.
    
 0.895
Your Current Organism:
Coniosporium apollinis
NCBI taxonomy Id: 1168221
Other names: C. apollinis CBS 100218, Coniosporium apollinis CBS 100218, Coniosporium apollinis CBS 352.97
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