STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_10757Uncharacterized protein. (830 aa)    
Predicted Functional Partners:
Vbra_2617
Uncharacterized protein.
   
 0.998
Vbra_16748
Uncharacterized protein.
   
 0.998
Vbra_18129
KH domain-containing protein.
   
 0.996
Vbra_7071
RIO domain-containing protein.
   
 0.994
Vbra_7833
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 
 0.992
Vbra_5982
NUC173 domain-containing protein.
   
 
 0.991
Vbra_13289
Uncharacterized protein.
   
 0.990
Vbra_14352
Uncharacterized protein; Belongs to the NOB1 family.
   
 0.990
Vbra_13857
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
 0.988
Vbra_15606
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.988
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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