STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_19967Aldedh domain-containing protein. (457 aa)    
Predicted Functional Partners:
Vbra_9373
PUA domain-containing protein.
 
 0.987
Vbra_12825
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
    
 0.839
Vbra_20587
ELFV_dehydrog domain-containing protein.
    
 0.835
Vbra_19479
Pyr_redox_2 domain-containing protein.
    
 0.795
Vbra_12842
AA_kinase domain-containing protein.
  
 
 0.787
Vbra_3421
Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
 0.779
Vbra_7817
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.760
Vbra_5619
Aldedh domain-containing protein.
    
 0.760
Vbra_16198
Glutamine amidotransferase type-2 domain-containing protein.
    
 0.755
Vbra_6014
Glutamine amidotransferase type-2 domain-containing protein.
    
 0.755
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.