STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_4678Lysine--tRNA ligase. (627 aa)    
Predicted Functional Partners:
Vbra_23365
GST C-terminal domain-containing protein.
   
 0.934
Vbra_17201
tRNA-binding domain-containing protein.
  
 0.898
Vbra_17540
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.891
Vbra_7902
RF_PROK_I domain-containing protein.
  
 
 0.889
Vbra_7770
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.888
Vbra_19782
GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.888
Vbra_19912
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.887
Vbra_11768
GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.883
Vbra_9824
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.879
Vbra_13640
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.
  
 
 0.856
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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