STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_4867Uncharacterized protein. (776 aa)    
Predicted Functional Partners:
Vbra_21485
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase.
 
  
 0.916
Vbra_4858
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
     
 0.835
Vbra_17707
Cytidylate_kin domain-containing protein.
    
 0.795
Vbra_2460
Uncharacterized protein.
    
 0.756
Vbra_21714
4-hydroxybenzoate polyprenyltransferase, mitochondrial; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate.
    
 0.756
Vbra_9165
Uncharacterized protein.
  
 
 0.751
Vbra_21470
Uncharacterized protein.
  
 
 0.751
Vbra_18781
Uncharacterized protein.
  
 
 0.751
Vbra_12031
Uncharacterized protein.
    
 0.741
Vbra_16196
GHMP_kinases_N domain-containing protein.
 
   
 0.688
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.