STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_11247Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (735 aa)    
Predicted Functional Partners:
Vbra_21640
C2H2-type domain-containing protein.
    
   0.760
Vbra_18434
Uncharacterized protein.
    
   0.760
Vbra_3205
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.664
Vbra_20087
Cupin type-1 domain-containing protein.
   
 0.486
Vbra_7068
PPDK_N domain-containing protein.
   
 0.486
Vbra_11586
Cupin type-1 domain-containing protein.
   
 0.486
Vbra_5049
Cupin type-1 domain-containing protein.
   
 0.486
Vbra_3883
PPDK_N domain-containing protein.
   
 0.486
Vbra_5048
Cupin type-1 domain-containing protein.
   
 0.486
Vbra_5721
PPDK_N domain-containing protein.
   
 0.486
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.