STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_20374Uncharacterized protein. (634 aa)    
Predicted Functional Partners:
Vbra_13080
GIDA_assoc domain-containing protein.
 0.916
Vbra_5387
Uncharacterized protein.
  
 0.806
Vbra_3141
Uncharacterized protein.
  
 0.806
Vbra_17364
Uncharacterized protein.
  
 0.806
Vbra_18066
Uncharacterized protein.
  
 0.806
Vbra_5879
SufE domain-containing protein.
  
 0.755
Vbra_10348
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
    
   0.754
Vbra_3701
G domain-containing protein.
  
 
 0.747
Vbra_12899
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
    
 
 0.739
Vbra_11021
Uncharacterized protein.
    
 
 0.706
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.