STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_2056Uncharacterized protein. (307 aa)    
Predicted Functional Partners:
Vbra_8360
WD_REPEATS_REGION domain-containing protein.
   
 0.997
Vbra_15149
Uncharacterized protein.
   
 0.997
Vbra_18373
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.996
Vbra_3456
Uncharacterized protein.
   
 0.995
Vbra_14636
Uncharacterized protein.
   
 0.994
Vbra_15760
Uncharacterized protein.
   
 0.994
Vbra_6090
Bms1-type G domain-containing protein.
   
 0.994
Vbra_12583
Brix domain-containing protein.
   
 0.993
Vbra_13945
Uncharacterized protein.
   
 0.993
Vbra_14249
S4 RNA-binding domain-containing protein.
   
 0.993
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (22%) [HD]