STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_7344J domain-containing protein. (151 aa)    
Predicted Functional Partners:
Vbra_22621
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.990
Vbra_3297
Uncharacterized protein.
   
 0.989
Vbra_9738
Plug_translocon domain-containing protein.
   
 
 0.980
Vbra_17977
Plug_translocon domain-containing protein; Belongs to the SecY/SEC61-alpha family.
   
 
 0.980
Vbra_16095
Uncharacterized protein.
    
 
 0.903
Vbra_6526
Uncharacterized protein.
    
 
 0.903
Vbra_19381
Protein kinase domain-containing protein.
    
 
 0.876
Vbra_11464
Uncharacterized protein.
  
 
 0.838
Vbra_20363
J domain-containing protein.
     
 0.830
Vbra_11371
Uncharacterized protein.
     
 0.830
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.