STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_3732Tr-type G domain-containing protein. (1093 aa)    
Predicted Functional Partners:
Vbra_6727
C2H2-type domain-containing protein.
  
 
 0.970
Vbra_7510
Diphthami_syn_2 domain-containing protein.
   
 0.967
Vbra_5444
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
  
 0.927
Vbra_12506
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
  
 0.926
Vbra_5395
Ribosomal_S17_N domain-containing protein.
  
 0.926
Vbra_8564
Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.
  
 0.926
Vbra_14858
Uncharacterized protein.
  
 0.926
Vbra_5760
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
  
 0.926
Vbra_16767
Ribosomal_L18_c domain-containing protein.
  
 0.926
Vbra_9829
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
 0.926
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.