STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_11872Glyco_trans_2-like domain-containing protein. (837 aa)    
Predicted Functional Partners:
Vbra_13390
Aminotran_5 domain-containing protein.
    
 0.613
Vbra_19215
Phosphomannomutase; Involved in the synthesis of the GDP-mannose and dolichol- phosphate-mannose required for a number of critical mannosyl transfer reactions.
  
 
 0.605
Vbra_3205
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
  0.602
Vbra_15440
Uncharacterized protein.
  
 
 0.595
Vbra_12361
Glucose-6-phosphate isomerase; Belongs to the GPI family.
    
 0.577
Vbra_11738
Uncharacterized protein.
  
 
 0.570
Vbra_13876
Phosphoacetylglucosamine mutase.
   
 0.570
Vbra_16866
Flavokinase domain-containing protein.
     
 0.569
Vbra_18155
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
  
 
 0.565
Vbra_4879
Uncharacterized protein.
  
 
  0.560
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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