STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_20454Inhibitor of growth protein. (405 aa)    
Predicted Functional Partners:
Vbra_1527
Uncharacterized protein.
   
 0.999
Vbra_12535
Uncharacterized protein.
    
 0.996
Vbra_2190
Bromo domain-containing protein.
    
 0.993
Vbra_1087
Uncharacterized protein.
    
 0.993
Vbra_9178
TAFII55_N domain-containing protein.
    
 0.991
Vbra_13285
Uncharacterized protein.
    
 0.989
Vbra_6491
Uncharacterized protein.
    
 0.989
Vbra_11779
TFIIB-type domain-containing protein.
    
 0.988
Vbra_11398
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
  0.987
Vbra_218
Uncharacterized protein.
   
 0.987
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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