Vbra_12096 protein (Vitrella brassicaformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Vbra_12096

Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1496 aa)

Predicted Functional Partners:

Vbra_17487

0.911

Vbra_21251

0.851

Vbra_7791

0.835

Vbra_13454

0.835

Vbra_7825

0.821

Vbra_20709

0.821

Vbra_4123

0.821

Vbra_8069

0.821

Vbra_13845

0.821

Vbra_15500

0.821

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_12096	Vbra_13454	A0A0G4EK21	A0A0G4ETW3	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.835
Vbra_12096	Vbra_13845	A0A0G4EK21	A0A0G4EY70	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	RING-type domain-containing protein.	0.821
Vbra_12096	Vbra_15500	A0A0G4EK21	A0A0G4FIT8	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	RING-type domain-containing protein.	0.821
Vbra_12096	Vbra_17487	A0A0G4EK21	A0A0G4GDR7	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.911
Vbra_12096	Vbra_20709	A0A0G4EK21	A0A0G4EPB7	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.821
Vbra_12096	Vbra_21251	A0A0G4EK21	A0A0G4F9D8	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.851
Vbra_12096	Vbra_4123	A0A0G4EK21	A0A0G4ERY9	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.821
Vbra_12096	Vbra_7791	A0A0G4EK21	A0A0G4ELX0	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.835
Vbra_12096	Vbra_7825	A0A0G4EK21	A0A0G4EML2	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.821
Vbra_12096	Vbra_8069	A0A0G4EK21	A0A0G4ETE6	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.821
Vbra_13454	Vbra_12096	A0A0G4ETW3	A0A0G4EK21	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.835
Vbra_13454	Vbra_17487	A0A0G4ETW3	A0A0G4GDR7	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.640
Vbra_13454	Vbra_21251	A0A0G4ETW3	A0A0G4F9D8	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.640
Vbra_13454	Vbra_7791	A0A0G4ETW3	A0A0G4ELX0	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein.	0.573
Vbra_13845	Vbra_12096	A0A0G4EY70	A0A0G4EK21	RING-type domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.821
Vbra_13845	Vbra_15500	A0A0G4EY70	A0A0G4FIT8	RING-type domain-containing protein.	RING-type domain-containing protein.	0.601
Vbra_13845	Vbra_17487	A0A0G4EY70	A0A0G4GDR7	RING-type domain-containing protein.	Uncharacterized protein.	0.751
Vbra_13845	Vbra_21251	A0A0G4EY70	A0A0G4F9D8	RING-type domain-containing protein.	Uncharacterized protein.	0.658
Vbra_13845	Vbra_7791	A0A0G4EY70	A0A0G4ELX0	RING-type domain-containing protein.	Uncharacterized protein.	0.607
Vbra_15500	Vbra_12096	A0A0G4FIT8	A0A0G4EK21	RING-type domain-containing protein.	Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.821