STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_20432SAP domain-containing protein. (362 aa)    
Predicted Functional Partners:
Vbra_5788
DAGKc domain-containing protein.
    
  0.586
Vbra_16672
Uncharacterized protein.
    
  0.583
Vbra_11341
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
   
 
  0.574
Vbra_13216
PNPLA domain-containing protein.
    
  0.535
Vbra_16456
PNPLA domain-containing protein.
    
  0.535
Vbra_16368
Uncharacterized protein.
   
 
  0.523
Vbra_9719
Uncharacterized protein.
   
 
  0.523
Vbra_11604
Uncharacterized protein.
   
 
  0.518
Vbra_5481
Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
   
 
  0.518
Vbra_4384
Uncharacterized protein.
   
 
  0.518
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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