STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_7918Uncharacterized protein; Belongs to the DEAD box helicase family. (775 aa)    
Predicted Functional Partners:
Vbra_17517
Uncharacterized protein.
   
 0.963
Vbra_2833
Uncharacterized protein.
   
 
 0.959
Vbra_5888
WD_REPEATS_REGION domain-containing protein.
   
 0.957
Vbra_19984
CPL domain-containing protein.
   
 
 0.955
Vbra_12190
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.951
Vbra_9653
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.945
Vbra_2184
Uncharacterized protein.
   
 
 0.936
Vbra_3291
CBF domain-containing protein.
   
 
 0.936
Vbra_675
Uncharacterized protein.
   
 
 0.936
Vbra_22811
Uncharacterized protein.
   
 
 0.934
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.