STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_2880Amidohydro-rel domain-containing protein. (528 aa)    
Predicted Functional Partners:
Vbra_3306
Pribosyltran domain-containing protein.
  
 
 0.950
Vbra_21417
Uncharacterized protein.
  
 0.942
Vbra_19841
Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
  
 0.942
Vbra_8408
CN hydrolase domain-containing protein.
 
 
 0.908
Vbra_5300
DHO_dh domain-containing protein.
  
 0.901
Vbra_2433
Uncharacterized protein.
  
 0.901
Vbra_7220
DHO_dh domain-containing protein.
  
 0.889
Vbra_3487
DHO_dh domain-containing protein.
  
 0.889
Vbra_3036
Uncharacterized protein.
  
 
 0.886
Vbra_15088
OMPdecase domain-containing protein.
  
 
 0.886
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.