STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_12836AAA domain-containing protein; Belongs to the AAA ATPase family. (447 aa)    
Predicted Functional Partners:
Vbra_11265
PCI domain-containing protein.
   
 0.998
Vbra_4932
PCI domain-containing protein.
   
 0.998
Vbra_11722
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
0.998
Vbra_3830
Uncharacterized protein; Belongs to the proteasome subunit S1 family.
   
 0.998
Vbra_3822
PCI domain-containing protein.
   
 0.998
Vbra_7557
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
 0.998
Vbra_20530
Uncharacterized protein.
   
 0.998
Vbra_8059
VWFA domain-containing protein.
   
 0.998
Vbra_1705
Proteasome subunit alpha type.
   
 0.998
Vbra_13620
MPN domain-containing protein.
   
 0.998
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.