STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_12994Uncharacterized protein. (503 aa)    
Predicted Functional Partners:
Vbra_1562
WD_REPEATS_REGION domain-containing protein.
    
 0.961
Vbra_4005
Uncharacterized protein.
  
  
0.860
Vbra_14738
Uncharacterized protein.
   
 
 0.836
Vbra_7137
Uncharacterized protein.
    
 0.799
Vbra_12380
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.797
Vbra_13696
Uncharacterized protein.
    
 0.797
Vbra_14744
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.797
Vbra_18443
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.797
Vbra_17509
Uncharacterized protein.
    
 0.785
Vbra_23046
WD_REPEATS_REGION domain-containing protein.
    
 0.780
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.