Vbra_13378 protein (Vitrella brassicaformis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

Vbra_13378

Uncharacterized protein. (398 aa)

Predicted Functional Partners:

Vbra_2420

0.990

Vbra_4950

0.985

Vbra_574

0.970

Vbra_21207

0.955

Vbra_6345

0.955

Vbra_22889

0.955

Vbra_18279

0.933

Vbra_11738

0.870

Vbra_3293

0.830

Vbra_8598

0.588

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_11738	Vbra_13378	A0A0G4EHD8	A0A0G4ETP6	Uncharacterized protein.	Uncharacterized protein.	0.870
Vbra_11738	Vbra_18279	A0A0G4EHD8	A0A0G4GLM8	Uncharacterized protein.	PFU domain-containing protein.	0.753
Vbra_11738	Vbra_21207	A0A0G4EHD8	A0A0G4F5N3	Uncharacterized protein.	Uncharacterized protein.	0.800
Vbra_11738	Vbra_22889	A0A0G4EHD8	A0A0G4H319	Uncharacterized protein.	Uncharacterized protein.	0.753
Vbra_11738	Vbra_2420	A0A0G4EHD8	A0A0G4ES38	Uncharacterized protein.	Uncharacterized protein.	0.878
Vbra_11738	Vbra_3293	A0A0G4EHD8	A0A0G4G8J5	Uncharacterized protein.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins.	0.433
Vbra_11738	Vbra_4950	A0A0G4EHD8	A0A0G4EI24	Uncharacterized protein.	Uncharacterized protein.	0.850
Vbra_11738	Vbra_574	A0A0G4EHD8	A0A0G4F865	Uncharacterized protein.	Uncharacterized protein.	0.800
Vbra_11738	Vbra_6345	A0A0G4EHD8	A0A0G4GS83	Uncharacterized protein.	Uncharacterized protein.	0.753
Vbra_13378	Vbra_11738	A0A0G4ETP6	A0A0G4EHD8	Uncharacterized protein.	Uncharacterized protein.	0.870
Vbra_13378	Vbra_18279	A0A0G4ETP6	A0A0G4GLM8	Uncharacterized protein.	PFU domain-containing protein.	0.933
Vbra_13378	Vbra_21207	A0A0G4ETP6	A0A0G4F5N3	Uncharacterized protein.	Uncharacterized protein.	0.955
Vbra_13378	Vbra_22889	A0A0G4ETP6	A0A0G4H319	Uncharacterized protein.	Uncharacterized protein.	0.955
Vbra_13378	Vbra_2420	A0A0G4ETP6	A0A0G4ES38	Uncharacterized protein.	Uncharacterized protein.	0.990
Vbra_13378	Vbra_3293	A0A0G4ETP6	A0A0G4G8J5	Uncharacterized protein.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins which plays important roles in the quality control and ER-associated degradation of GPI-anchored proteins.	0.830
Vbra_13378	Vbra_4950	A0A0G4ETP6	A0A0G4EI24	Uncharacterized protein.	Uncharacterized protein.	0.985
Vbra_13378	Vbra_574	A0A0G4ETP6	A0A0G4F865	Uncharacterized protein.	Uncharacterized protein.	0.970
Vbra_13378	Vbra_6345	A0A0G4ETP6	A0A0G4GS83	Uncharacterized protein.	Uncharacterized protein.	0.955
Vbra_13378	Vbra_8598	A0A0G4ETP6	A0A0G4EYE8	Uncharacterized protein.	Uncharacterized protein.	0.588
Vbra_18279	Vbra_11738	A0A0G4GLM8	A0A0G4EHD8	PFU domain-containing protein.	Uncharacterized protein.	0.753

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

25

PPI enrichment p-value:

1.18e-07

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 112

1.44

2.79

3.44e-13

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

11 of 55

1.75

4.59

1.21e-16

GO:0019843

rRNA binding

4 of 40

1.44

1.12

0.0024

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 60

1.71

4.43

6.02e-17

GO:0044391

Ribosomal subunit

2 of 14

1.6

0.78

0.0260

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:107

Ribosome

10 of 51

1.74

4.28

5.73e-15

CL:99

Ribosome

11 of 63

1.69

4.2

5.28e-16

CL:109

Ribosome

6 of 41

1.61

2.43

1.93e-07

CL:192

Mixed, incl. L28p-like, and Zinc-binding ribosomal protein

3 of 5

2.22

2.1

8.51e-05

CL:176

DNA repair Rad51/transcription factor NusA, alpha-helical, and Ribosome

3 of 6

2.14

2.0

0.00012

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

mmr03010

Ribosome

11 of 53

1.76

4.81

1.41e-17

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

8 of 46

1.69

3.25

2.39e-10

GOCC:0043229

Intracellular organelle

10 of 331

0.92

1.03

2.35e-07

GOCC:0005622

Intracellular

11 of 1179

0.41

0.35

0.0013

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

11 of 55

1.75

4.66

4.00e-17

KW-0699

rRNA-binding

4 of 38

1.47

1.31

0.00066

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