STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_13504RING-type domain-containing protein. (327 aa)    
Predicted Functional Partners:
Vbra_17778
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
 0.540
Vbra_4853
Apple domain-containing protein; Belongs to the peptidase S8 family.
    
  0.532
Vbra_5430
Peptidase_S8 domain-containing protein.
    
  0.532
Vbra_20924
Cadherin-like domain-containing protein.
    
  0.532
Vbra_14189
Uncharacterized protein.
    
  0.532
Vbra_16127
Apple domain-containing protein; Belongs to the peptidase S8 family.
    
  0.532
Vbra_8361
Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.528
Vbra_14623
Ubiquitin-like domain-containing protein.
    
  0.520
Vbra_21786
Ubiquitin-like domain-containing protein.
    
  0.520
Vbra_430
Ubiquitin-like domain-containing protein.
    
  0.520
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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