Vbra_8332 protein (Vitrella brassicaformis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Vbra_8332

MPN domain-containing protein. (2323 aa)

Predicted Functional Partners:

Vbra_2499

0.997

Vbra_4566

0.997

Vbra_10626

0.997

Vbra_11947

0.992

Vbra_15509

0.992

Vbra_11868

0.991

Vbra_639

0.991

Vbra_22235

0.991

Vbra_4602

0.991

Vbra_8266

0.990

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_10626	Vbra_11868	A0A0G4H5X0	A0A0G4EHI0	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.979
Vbra_10626	Vbra_11947	A0A0G4H5X0	A0A0G4EGZ8	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.973
Vbra_10626	Vbra_15509	A0A0G4H5X0	A0A0G4FIT5	WD_REPEATS_REGION domain-containing protein.	Sm domain-containing protein.	0.980
Vbra_10626	Vbra_22235	A0A0G4H5X0	A0A0G4GDX1	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.982
Vbra_10626	Vbra_2499	A0A0G4H5X0	A0A0G4F7A0	WD_REPEATS_REGION domain-containing protein.	Tr-type G domain-containing protein.	0.997
Vbra_10626	Vbra_4566	A0A0G4H5X0	A0A0G4GN47	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.996
Vbra_10626	Vbra_4602	A0A0G4H5X0	A0A0G4GSX6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.972
Vbra_10626	Vbra_639	A0A0G4H5X0	A0A0G4G3M2	WD_REPEATS_REGION domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.983
Vbra_10626	Vbra_8266	A0A0G4H5X0	A0A0G4EUJ5	WD_REPEATS_REGION domain-containing protein.	Sm domain-containing protein.	0.972
Vbra_10626	Vbra_8332	A0A0G4H5X0	A0A0G4EWF4	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.997
Vbra_11868	Vbra_10626	A0A0G4EHI0	A0A0G4H5X0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	WD_REPEATS_REGION domain-containing protein.	0.979
Vbra_11868	Vbra_11947	A0A0G4EHI0	A0A0G4EGZ8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
Vbra_11868	Vbra_15509	A0A0G4EHI0	A0A0G4FIT5	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.999
Vbra_11868	Vbra_22235	A0A0G4EHI0	A0A0G4GDX1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
Vbra_11868	Vbra_2499	A0A0G4EHI0	A0A0G4F7A0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Tr-type G domain-containing protein.	0.993
Vbra_11868	Vbra_4566	A0A0G4EHI0	A0A0G4GN47	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.988
Vbra_11868	Vbra_4602	A0A0G4EHI0	A0A0G4GSX6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.959
Vbra_11868	Vbra_639	A0A0G4EHI0	A0A0G4G3M2	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
Vbra_11868	Vbra_8266	A0A0G4EHI0	A0A0G4EUJ5	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Sm domain-containing protein.	0.997
Vbra_11868	Vbra_8332	A0A0G4EHI0	A0A0G4EWF4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	MPN domain-containing protein.	0.991