STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_1545HMG box domain-containing protein. (409 aa)    
Predicted Functional Partners:
Vbra_17035
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.631
Vbra_15546
PPM-type phosphatase domain-containing protein.
    
 0.606
Vbra_12688
Uncharacterized protein.
    
 0.576
Vbra_13838
Protein kinase domain-containing protein.
    
 0.576
Vbra_4138
Protein kinase domain-containing protein.
    
 0.576
Vbra_18517
Protein kinase domain-containing protein.
    
 0.576
Vbra_2429
Phosphoribulokinase.
    
 0.554
Vbra_5865
Uridine kinase; Belongs to the uridine kinase family.
    
 0.554
Vbra_19583
Uncharacterized protein.
    
 0.554
Vbra_13692
Uncharacterized protein.
    
 0.491
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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