STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_13961Cactin_mid domain-containing protein. (687 aa)    
Predicted Functional Partners:
Vbra_11121
Uncharacterized protein.
     
 0.686
Vbra_14526
MI domain-containing protein.
   
 
  0.669
Vbra_9890
WD_REPEATS_REGION domain-containing protein.
   
 
 0.669
Vbra_17692
Nkap_C domain-containing protein.
   
 
  0.598
Vbra_5618
Ubiquitin-like domain-containing protein.
    
 0.548
Vbra_11035
RRM domain-containing protein.
    
  0.537
Vbra_11291
PWI domain-containing protein.
     
 0.527
Vbra_21640
C2H2-type domain-containing protein.
   
  0.510
Vbra_18434
Uncharacterized protein.
   
  0.510
Vbra_22598
Uncharacterized protein.
   
 
  0.477
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.