STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_21008Uncharacterized protein. (702 aa)    
Predicted Functional Partners:
Vbra_10842
Uncharacterized protein.
    
   0.756
Vbra_15020
Cyclin N-terminal domain-containing protein.
   
 
 0.740
Vbra_21901
Cyclin N-terminal domain-containing protein.
   
 
 0.740
Vbra_3891
Protein kinase domain-containing protein.
    
 
 0.629
Vbra_12423
Protein kinase domain-containing protein.
    
 
 0.629
Vbra_21586
Protein kinase domain-containing protein.
    
 
 0.629
Vbra_21619
Protein kinase domain-containing protein.
    
 
 0.629
Vbra_6206
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.629
Vbra_18694
Protein kinase domain-containing protein.
    
 
 0.629
Vbra_19820
Protein kinase domain-containing protein.
    
 
 0.629
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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