STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_13796PAS domain-containing protein. (284 aa)    
Predicted Functional Partners:
Vbra_12313
Serine/threonine-protein phosphatase.
    
 0.658
Vbra_345
ANK_REP_REGION domain-containing protein.
    
  0.555
Vbra_2288
ANK_REP_REGION domain-containing protein.
    
  0.555
Vbra_4601
Uncharacterized protein.
    
  0.549
Vbra_10552
G domain-containing protein.
   
 0.548
Vbra_8375
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.498
Vbra_13692
Uncharacterized protein.
    
 0.479
Vbra_15514
GUN4 domain-containing protein.
    
 0.479
Vbra_11261
Uncharacterized protein.
    
  0.443
Vbra_13243
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.442
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.