Vbra_14040 protein (Vitrella brassicaformis)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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protein homology

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Score

Vbra_14040

IGPS domain-containing protein. (333 aa)

Predicted Functional Partners:

Vbra_10835

0.999

Vbra_10032

0.999

Vbra_19195

0.999

Vbra_22230

0.994

Vbra_10828

0.993

Vbra_4894

0.992

Vbra_5810

0.983

Vbra_7968

0.956

Vbra_5368

0.956

Vbra_7642

0.955

Your Current Organism:

Vitrella brassicaformis

NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Vbra_10032	Vbra_10828	A0A0G4GHK3	A0A0G4E8Z7	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.993
Vbra_10032	Vbra_10835	A0A0G4GHK3	A0A0G4E862	Glutamine amidotransferase type-1 domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.676
Vbra_10032	Vbra_14040	A0A0G4GHK3	A0A0G4F0L6	Glutamine amidotransferase type-1 domain-containing protein.	IGPS domain-containing protein.	0.999
Vbra_10032	Vbra_19195	A0A0G4GHK3	A0A0G4GZP4	Glutamine amidotransferase type-1 domain-containing protein.	MR_MLE domain-containing protein.	0.685
Vbra_10032	Vbra_22230	A0A0G4GHK3	A0A0G4GD90	Glutamine amidotransferase type-1 domain-containing protein.	PALP domain-containing protein.	0.964
Vbra_10032	Vbra_4894	A0A0G4GHK3	A0A0G4EE87	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.999
Vbra_10032	Vbra_5368	A0A0G4GHK3	A0A0G4ES12	Glutamine amidotransferase type-1 domain-containing protein.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.717
Vbra_10032	Vbra_5810	A0A0G4GHK3	A0A0G4FH55	Glutamine amidotransferase type-1 domain-containing protein.	FIST domain-containing protein.	0.962
Vbra_10032	Vbra_7642	A0A0G4GHK3	A0A0G4EJI8	Glutamine amidotransferase type-1 domain-containing protein.	Chorismate synthase.	0.845
Vbra_10032	Vbra_7968	A0A0G4GHK3	A0A0G4ENP6	Glutamine amidotransferase type-1 domain-containing protein.	Uncharacterized protein.	0.717
Vbra_10828	Vbra_10032	A0A0G4E8Z7	A0A0G4GHK3	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.993
Vbra_10828	Vbra_10835	A0A0G4E8Z7	A0A0G4E862	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.991
Vbra_10828	Vbra_14040	A0A0G4E8Z7	A0A0G4F0L6	Uncharacterized protein.	IGPS domain-containing protein.	0.993
Vbra_10828	Vbra_19195	A0A0G4E8Z7	A0A0G4GZP4	Uncharacterized protein.	MR_MLE domain-containing protein.	0.992
Vbra_10828	Vbra_22230	A0A0G4E8Z7	A0A0G4GD90	Uncharacterized protein.	PALP domain-containing protein.	0.994
Vbra_10828	Vbra_4894	A0A0G4E8Z7	A0A0G4EE87	Uncharacterized protein.	Uncharacterized protein.	0.999
Vbra_10828	Vbra_5368	A0A0G4E8Z7	A0A0G4ES12	Uncharacterized protein.	3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.	0.473
Vbra_10828	Vbra_5810	A0A0G4E8Z7	A0A0G4FH55	Uncharacterized protein.	FIST domain-containing protein.	0.974
Vbra_10828	Vbra_7642	A0A0G4E8Z7	A0A0G4EJI8	Uncharacterized protein.	Chorismate synthase.	0.901
Vbra_10828	Vbra_7968	A0A0G4E8Z7	A0A0G4ENP6	Uncharacterized protein.	Uncharacterized protein.	0.473

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

19

average node degree:

3.45

avg. local clustering coefficient:

0.812

expected number of edges:

10

PPI enrichment p-value:

0.00965

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006542

Glutamine biosynthetic process

4 of 4

2.33

2.43

2.12e-05

GO:0042128

Nitrate assimilation

2 of 3

2.15

0.83

0.0294

GO:0043436

Oxoacid metabolic process

7 of 229

0.82

0.6

0.0050

GO:0044281

Small molecule metabolic process

8 of 394

0.64

0.44

0.0115

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004356

Glutamate-ammonia ligase activity

4 of 4

2.33

2.58

1.04e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2363

Nitrogen metabolism, and Rieske-like [2Fe-2S] domain

7 of 12

2.1

4.41

1.07e-10

CL:2376

Rieske-like [2Fe-2S] domain, and BFD-like [2Fe-2S] binding domain

4 of 5

2.23

2.86

2.12e-06

CL:2359

Mixed, incl. Nitrogen metabolism, and Porphyrin and chlorophyll metabolism

8 of 59

1.46

2.38

5.59e-09

CL:2358

Mixed, incl. Nitrogen metabolism, and Porphyrin and chlorophyll metabolism

9 of 87

1.35

2.13

1.88e-09

CL:2364

Ammonia ligase activity, and FAD binding domain

3 of 6

2.03

1.73

0.00037

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

hna00910

Nitrogen metabolism

9 of 18

2.03

5.58

4.00e-15

hna00630

Glyoxylate and dicarboxylate metabolism

6 of 20

1.81

3.08

2.11e-08

hna00220

Arginine biosynthesis

4 of 17

1.7

1.96

2.90e-05

hna00250

Alanine, aspartate and glutamate metabolism

4 of 22

1.59

1.74

5.97e-05

hna01120

Microbial metabolism in diverse environments

9 of 140

1.14

1.52

2.11e-08

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13806

Rieske-like [2Fe-2S] domain

2 of 2

2.33

0.74

0.0445

PF04324

BFD-like [2Fe-2S] binding domain

2 of 2

2.33

0.74

0.0445

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036651

Glutamine synthetase, N-terminal domain superfamily

4 of 4

2.33

2.45

1.98e-05

IPR027303

Glutamine synthetase, glycine-rich site

4 of 4

2.33

2.45

1.98e-05

IPR008146

Glutamine synthetase, catalytic domain

4 of 4

2.33

2.45

1.98e-05

IPR014746

Glutamine synthetase/guanido kinase, catalytic domain

4 of 5

2.23

2.41

1.98e-05

IPR041854

BFD-like [2Fe-2S]-binding domain superfamily

2 of 2

2.33

0.86

0.0265

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01230

Glutamine synthetase, catalytic domain

4 of 4

2.33

2.93

1.96e-06

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