STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_14211ANK_REP_REGION domain-containing protein. (1247 aa)    
Predicted Functional Partners:
Vbra_12313
Serine/threonine-protein phosphatase.
   
 0.832
Vbra_20118
Metallophos domain-containing protein.
   
 0.831
Vbra_1703
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.831
Vbra_21101
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.831
Vbra_16539
Serine/threonine-protein phosphatase.
   
 0.831
Vbra_16648
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.831
Vbra_18402
Protein kinase domain-containing protein.
    
 0.704
Vbra_12142
Uncharacterized protein.
   
 0.690
Vbra_13731
Uncharacterized protein.
   
 0.690
Vbra_21124
Protein kinase domain-containing protein.
   
 0.690
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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