STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_14302HMG box domain-containing protein. (337 aa)    
Predicted Functional Partners:
Vbra_8489
Uncharacterized protein.
   
 0.883
Vbra_11708
Uncharacterized protein.
   
 0.869
Vbra_19823
Uncharacterized protein.
   
 0.859
Vbra_4082
Transcription elongation factor SPT5.
   
 0.858
Vbra_22761
CDC73_C domain-containing protein.
   
 0.850
Vbra_18057
Spt4 domain-containing protein.
    
 0.839
Vbra_18435
RPOLD domain-containing protein.
    
 0.826
Vbra_16380
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.814
Vbra_3765
RPOL4c domain-containing protein.
    
 0.810
Vbra_8375
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.810
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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