STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_8807MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family. (424 aa)    
Predicted Functional Partners:
Vbra_14717
Protein kinase domain-containing protein.
   
 0.969
Vbra_7907
AP-1 complex subunit gamma.
    
 0.916
Vbra_7533
AP complex subunit beta.
    
 0.915
Vbra_15600
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.915
Vbra_16467
Uncharacterized protein.
    
 0.915
Vbra_16923
AP4E_app_platf domain-containing protein.
    
 0.874
Vbra_14235
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.873
Vbra_23025
Alpha_adaptin_C domain-containing protein.
   
 0.856
Vbra_1019
Alpha_adaptin_C domain-containing protein.
   
 0.856
Vbra_19286
Alpha_adaptinC2 domain-containing protein.
   
 0.856
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.