STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_1301Uncharacterized protein. (678 aa)    
Predicted Functional Partners:
Vbra_12066
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
  
 0.914
Vbra_6297
Uncharacterized protein.
  
 
 0.914
Vbra_14798
Uncharacterized protein.
  
 
 0.777
Vbra_10711
Uncharacterized protein.
  
 
 0.777
Vbra_7578
Uncharacterized protein.
  
 0.766
Vbra_14486
Uncharacterized protein.
  
 0.766
Vbra_5434
Lipoyl-binding domain-containing protein.
  
 
 0.750
Vbra_18915
Uncharacterized protein.
  
 
 0.750
Vbra_14254
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.743
Vbra_14543
Acetolactate synthase.
  
 
 0.743
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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