STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_1320Uncharacterized protein. (1939 aa)    
Predicted Functional Partners:
Vbra_13635
Uncharacterized protein.
    
  0.726
Vbra_3288
Semialdhyde_dh domain-containing protein.
   
 0.526
Vbra_13390
Aminotran_5 domain-containing protein.
  
 
 0.525
Vbra_18155
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
    
 0.523
Vbra_7705
Uncharacterized protein.
   
 
  0.516
Vbra_10400
Flavodoxin-like domain-containing protein.
     
 0.493
Vbra_7324
Suf domain-containing protein.
    
 0.473
Vbra_15005
AA_kinase domain-containing protein.
    
  0.460
Vbra_17964
Homoserine dehydrogenase.
    
  0.460
Vbra_2992
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
   
  0.452
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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