STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_14485Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (174 aa)    
Predicted Functional Partners:
Vbra_20461
t-SNARE coiled-coil homology domain-containing protein.
    
  0.496
Vbra_20276
ANK_REP_REGION domain-containing protein.
    
  0.490
Vbra_14978
FYVE-type domain-containing protein.
    
  0.490
Vbra_9133
Uncharacterized protein.
    
  0.490
Vbra_16327
Uncharacterized protein.
    
  0.490
Vbra_22180
ANK_REP_REGION domain-containing protein.
    
  0.490
Vbra_22192
Uncharacterized protein.
    
  0.490
Vbra_20506
3Beta_HSD domain-containing protein; Belongs to the cytochrome P450 family.
    
 
 0.479
Vbra_20060
MSP domain-containing protein.
   
  0.477
Vbra_8832
Uncharacterized protein.
   
  0.477
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.