STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Vbra_21214Uncharacterized protein. (288 aa)    
Predicted Functional Partners:
Vbra_6499
WD_REPEATS_REGION domain-containing protein.
    
 0.696
Vbra_13390
Aminotran_5 domain-containing protein.
    
 0.647
Vbra_1329
Uncharacterized protein; Belongs to the peptidase M24B family.
    
 0.645
Vbra_2284
Uncharacterized protein; Belongs to the peptidase M24B family.
    
 0.645
Vbra_736
Uncharacterized protein.
    
 0.609
Vbra_3029
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 
 0.564
Vbra_20458
Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family.
   
 0.562
Vbra_9704
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
    
 0.561
Vbra_16742
Pex2_Pex12 domain-containing protein.
     
 0.538
Vbra_17410
Uncharacterized protein.
    
 0.529
Your Current Organism:
Vitrella brassicaformis
NCBI taxonomy Id: 1169540
Other names: V. brassicaformis CCMP3155, Vitrella brassicaformis CCMP3155
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